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Генетическая диагностика глазных болезней
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Диагностируем:
· Катаракта
· Глаукома
· Макулярная дегенерация
· Близорукость
· Пигментный ретинит
· Дистрофии сетчатки
· Дистрофии роговицы
· Увеиты
· Ретинобластома
· Амавроз Лебера
· Микрофтальм
· Анофтальм
· Аксенфельда-Ригера
· Ваарденбурга синдром
· Ретиношизис
· Косоглазие
· Выезд окулиста на дом
· Синдром Ашера
· Редкие болезни
 
 
Обучение
· Конференции
· Книги по офтальмогенетике
· Книга О.В. Хлебниковой Наследственная патология органа зрения
· Методы исследования в офтальмологии
· Классификация наследственных болезней сетчатки
· Критерии клинической классификации
· Форум по молекулярной медицине 2013
· Анализ геномных NGS данных
 
 
Пороки развития
· размеров и формы глаза
· придаточного аппарата
· роговицы
· сосудистой оболочки глаза
· хрусталика
· сетчатки
· зрительного нерва
· МУТАНТНЫЕ БЕЛКИ
 
 
Типы диагностики
· CLIA - что это?
· Кариотипирование
· FISH анализ
· SKY тест
· SSDGE или SSCP
· DGGE
· RFLPs
· Специфичный микрочип
· Типичный микрочип
· Прямое секвенирование
 
 
Панели тестов
· Панель "цилиопатии"
· Панель "пигментный ретинит"
· Панель "все глазные заболевания"
· Животные модели
· Пигментный ретинит: новости 2013
· Метаболизм сетчатки
· Дегенерация сетчатки и клеточная биология
 
 

Корреляция генотипа и фенотипа при врожденном амаврозе Лебера

 

Leber congenital amaurosis: genotype-phenotype correlations A cohort of 58 Dutch and Belgian LCA patients was genotyped using a newly developed LCA APEX microarray (chapter 3), and mutations were detected in 33% of the cases. In a study performed by Hanein and co-workers, a larger number of
LCA patients was screened using a more comprehensive but much more labor intensive approach (linkage analysis, dHPLC, direct sequencing), which revealed mutations in 44% of the cases21. Assuming that 44% is the maximum percentage of patients in which variants can be found today, we can conclude that the LCA APEX microarray detected 75% of the expected mutations. In our patient cohort, mutations were most frequently identified in the CRB1 gene (16%) and all carried either the p.C984Y or the p.K801X mutation. The second most frequently involved gene was GUCY2D. The GUCY2D p.R768W mutation appears to be a founder mutation in the Northwest of Europe, because of it unusually high frequency. In previous studies, mutations in CRB1 were found to underlie 10-13% of the LCA cases21-23. Recently, den Hollander and co-workers analysed 24 French- Canadian LCA patients and found only one mutated allele22. On the other hand, a Spanish study revealed CRB1 to be the causative gene in ~2/3 of all LCA patients with proven mutations, suggesting that the CRB1 gene is a major LCA causing gene in Western Europe (Vallespin E, personal communication, 2005). The latter two
studies illustrate extensive ethnic and geographical differences in the occurrence of CRB1 mutations.

Specific genotype-phenotype correlations were made for three LCA genes. Patients with AIPL1 mutations showed very poor visual acuity and hypermetropia with essentially normal appearing fundi on initial examination. After the age of eight years, extensive pigmentations became present with a striking bulls’ eye maculopathy. All patients with CRB1 mutations showed some or all signs of the RP12 phenotype, being relatively normal appearing optic discs and vessels, a distinct maculopathy, a nummular type of pigmentations, yellow-white subretinal dots, PPRPE, Coats-like exudative vasculopathy and vascular sheathing. LCA patients with GUCY2D mutations showed an extremely severe phenotype of no light perception and relatively normal appearing fundi until at least the age of 30 years. In a relatively large LCA cohort, Hanein and co-workers suggested that symptoms such as night blindness and photophobia may be distinctive symptoms that point to the gene involved23. Our study did not confirm this correlation. Night blindness or photophobia as gene-specific characteristics may be applicable to a group of patients with a certain genotype; however they cannot be used as good predictors in the individual patient. Unfortunately, although we presented specific genotypephenotype correlations, it may still be very difficult to predict the gene involved in a
single LCA patient after one clinical examination. Our study, although small in size, did indicate that there are trends in the correlation between LCA gene defects and the resulting phenotype. This correlation likely becomes more complete in the near future, as more detailed structural (optical coherence tomography) and functional (autofluorescence) imaging techniques are now available. These results, together with a longer follow up of the LCA patients, will add new phenotypic aspects to the genotype-phenotype correlations. In the future, more genotype-phenotype studies need to be performed in order to establish better indicators for which specific gene is involved.

The gene encoding the retinal pigment epithelium-specific 65-kDa protein (RPE65) was studied. RPE65 is the only gene studied in this thesis that
is expressed exclusively in the RPE. The most detailed phenotypic description of patients suffering from autosomal recessive early-onset retinal dystrophy caused by RPE65 mutations consistently showed preserved vision in childhood with a useful visual function beyond the second decade of life27, which later declined. Interfamilial variations in the RPE65-associated phenotype were found in these studies, which were attributed to the effects of different types of mutations (different amount of residual protein function). Authors reported on the existence of intrafamilial variations in patients with the same homozygous mutation in RPE65. In a large, previously isolated Dutch population a p.Y368H RPE65 mutation was detected homozygously in 13 out of 14
patients from 10 related families. The patients all showed signs of night blindness, nystagmus, severe visual impairment with relatively well-preserved visual fields and a non-detectable ERG in early childhood. On fundoscopy, the older patients showed optic disc pallor, attenuated vessels and a hypopigmented periphery. Surprisingly, a wide range of visual acuity (VA) and natural history of visual function was observed.

Approximately one third of the patients showed mild improvement, one third showed deterioration and one third showed a stable VA over a mean 9-year follow-up period. Clearly, other genetic and/or environmental factors must be involved in the heterogeneous phenotype in this pedigree. Further studies of this population revealed the founder mutation heterozygously in 1/28 of healthy controls rendering a risk of 1 in 56 for the child of a patient with a partner from this population to develop the retinal dystrophy due to homozygous RPE65 mutations. Likewise, heterozygous carriers with partners from this population have a risk of 1 in 112 that any of their children will develop the disease. Recently, additional patients from this population with either arRP or early-onset RP were ascertained. Sequence analysis of the RPE65 gene revealed new mutations in this gene, rendering the relative burden of RPE65 mutations in this population even higher (S. Yzer, F.P.M. Cremers, unpublished data). Our studies now enable p.Y368H carrier detection in this population, which theoretically could lead to a significant decrease of children born with this severe sensory handicap. It is estimated that autosomal recessive mutations in RPE65 account for 6-16% of the LCA cases in the world. The identification of patients with RPE65 defects has become very important since gene therapy studies in RPE65 deficient animal models proved to restore photoreceptor function both on observational and functional (ERG) studies30-32. A human clinical trial for single dose subretinal delivery of recombinant adeno-associated virus carrying wild-type RPE65 cDNA, is not far off.

As illustrated in authors studies, LCA is a remarkably heterogeneous disease, both clinically and genetically. Genotyping-phenotyping efforts as presented in this thesis will ultimately lead to a more detailed knowledge facilitating phenotypical differentiation. Together with new technologies these efforts will facilitate and speed up the molecular diagnostic process. Unfortunately, the current knowledge on LCA phenotypes does not provide enough information for accurate gene selection in individual patients. In order to aid a more profound genotype-phenotype correlation in the future, more mutations need to be identified, other LCA genes need to be identified and additional genotype-phenotype correlation studies are needed. Until then, the most logical and most cost-effective genotyping approach would be to have a patients’ DNA tested using the APEX LCA microarray.

Carriers of LCA mutations show distinctive functional abnormalities

Classical genetic definitions (Mendelian inheritance) teach that recessive mutations only cause a phenotype in the individual that carries two defective genes. A carrier with only one copy of the defective allele is thought to be protected by the wild-type allele and therefore show no obvious disease signs. Obligate heterozygous carriers of LCA mutations in the AIPL1, GUCY2D, RDH12 and RPGRIP1 genes, however, were shown to have distinct ERG abnormalities33,34, without any other signs or symptoms. Carriers of AIPL1 mutations showed abnormal rod amplitudes whereas carriers of heterozygous GUCY2D pathogenic sequence changes showed cone abnormalities, as did carriers of RDH12 variants. RPGRIP1 heterozygotes showed
both rod and cone ERG dysfunction34. In contrast to carriers of AIPL1, GUCY2D, RDH12 and RPGRIP1 pathogenic sequence changes, the heterozygous carriers of RPE65 mutations show normal ERG function35-37. Apparently, the presence of only one wild-type LCA allele in most families is not enough to suppress a (sub)clinical phenotype. Our goal in chapter 5 was to elucidate the possible CRB1 heterozygous phenotype.

Two different Crb1 animal models were previously studied. In a natural Crb1 mutant mouse, the predicted Crb1 protein is truncated lacking the transmembrane and intracellular domain. Histologically, these animals show irregularities at the outer limiting membrane and loss of the photoreceptors, eventually resulting in multiple intraretinal pseudorosettes localized to the inferior nasal quadrant of the fundus. In the second mouse model both Crb1 alleles were inactivated by deleting a 2.9 kb segments of genomic Crb1 sequence containing the upstream promoter region, exon 1 (encoding the start of the protein) and part of intron 1. This model shows giant half rosettes in the inferior temporal quadrant but no loss of overall retinal function on ERG 37.
In chapter 5 obligatory carriers of CRB1 mutations were tested for gene specific electroretinography abnormalities. Since the retinal dystrophies in the mouse models were localized we decided to use a specific mfERG (cone) pattern for testing the heterozygous CRB1 mutation carriers. Five out of 7 obligatory carriers demonstrated specific infero-nasal mosaic retinal dysfunction. The other two carriers showed no abnormalities on mfERG recordings.
The previously mentioned mouse model studies also provided information on Crb1 to be essential in the maintenance of the adherens junctions between
photoreceptors and Muller glia cells during light exposure. It was therefore proposed that Crb1 might play a crucial role in the prevention of retinal disorganization and retinal dystrophy. Light may consequently influence the development of retinal disease in the presence of CRB1 mutations37. Difference in light exposure may for that reason also play a role in the mfERG recording differences in the tested CRB1 mutation carriers.

Interestingly, McKay and co-workers recently reported on a family with autosomal dominant inherited pigmented paravenous chorioretinal atrophy due to a p.V62M mutation in the CRB1 gene38. This is of special interest because the chorioretinal atrophy was subtle in the early disease stage and limited to the inferior quadrant. Disease expression was variable and males where more likely to exhibit a severe phenotype compared to females which remained virtually asymptomatic. Although the cohort of heterozygous CRB1 carriers studied is rather small, the majority of our tested individuals display an abnormal phenotype. Moreover, this phenotype is different from previously described heterozygous carrier phenotypes in other tested LCA genes. In the future, mfERG testing of additional heterozygous carriers may specify the ocular carrier phenotype and may also provide characteristic findings in the parents of LCA offspring and add important information on the gene involved in their offspring. MfERG testing in parents of LCA children may therefore be an informative tool in differentiating which gene is involved, potentially facilitating the molecular diagnostic process. This thesis has supplied information on the usefulness and efficiency of newly developed microarrays that facilitate molecular diagnostics in a portion of autosomal recessive retinopathies. Furthermore, important clinical data on ABCA4 associated arCRD and arRP as for AIPL1, CRB1 and GUCY2D associated LCA and RPE65 associated early-onset rod-cone dystrophy were provided.

In conclusion, molecular and clinical studies of retinal diseases provide crucial knowledge for the understanding of normal and abnormal retinal development and function.

Подробнее в книге Autosomal recessive retinal dystrophies: genotypes & phenotypes (скачать, pdf 11 Мб) авторов Kortmann, Suzanne IJzer, Frans Cremers (Нидерланды, Radboud Nijmegen Университет).

 

 
 
 
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